Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3419201_3421789_F

Intron Information:

Intron Rank:

125966

Intron Class:

major

Intron Phase:

Intron Coordinates:

3419201 - 3421789

Intron Length:

2589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TTTTACCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTTTCTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.3

78.4

37.9

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

79.1

0.66

0.8

70.6

35.8

Minor 5ss

41.2

-1

2.8

41.5

Minor BPS

75.8

0.89

1.5

91.23

32.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034697

3418634 - 3426873

8240