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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3436417_3442449_F

Intron Information:

Intron Rank:
126665
Intron Class:
major
Intron Phase:
Intron Coordinates:
3436417 - 3442449
Intron Length:
6033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTCTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.7
0.76
0.8
77
30.6
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
71.7
0.77
1.7
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018277
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026713
3435898 - 3443694
7797