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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_346355_349714_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
346355 - 349714
Intron Length:
3360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGCTCTCATTC
Flanking Amino Acid:
EVLILMDFCRGGQVVNLMNQ
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
47.8
-0.1
1.8
59.45
40.1

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019623
316657 - 402033
85377
ENSAPLT00000040319
316657 - 393403
76747
ENSAPLT00000002277
316657 - 387455
70799
ENSAPLT00000037468
316657 - 402033
85377
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000047235
316657 - 402033
85377
ENSAPLT00000024110
316657 - 393403
76747
ENSAPLT00000042003
316657 - 391709
75053