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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3571631_3646391_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3571631 - 3646391
Intron Length:
74761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
TTTTCCTTTCCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
83.8
0.76
0.7
80.7
24.6
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
UNC5D
Ensembl Gene ID:
ENSAPLG00000013846
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014468
3568680 - 3710079
141400