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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_357167_359497_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
357167 - 359497
Intron Length:
2331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGTTAAATAAAT
Flanking Amino Acid:
KLITTKADIWALGCLLYKLC
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.7
35.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.7
0.73
0.7
81.3
23.7
Minor 5ss
45
-0.5
2.5
51.2
45.5
Minor BPS
47.8
-0
2.1
74.16
41.3

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024110
316657 - 393403
76747
ENSAPLT00000042003
316657 - 391709
75053
ENSAPLT00000019623
316657 - 402033
85377
ENSAPLT00000040319
316657 - 393403
76747
ENSAPLT00000002277
316657 - 387455
70799
ENSAPLT00000037468
316657 - 402033
85377
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000047235
316657 - 402033
85377