About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_359631_360613_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
359631 - 360613
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTGTA
5'SS Class:
major
3'SS Sequence:
TTATATTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATATTTTAAAG
Flanking Amino Acid:
RHSQDMHCLIRYMLEPDPDK
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.3
68.8
38
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
74.3
0.55
1.1
75
38.5
Minor 5ss
32.7
-2
3.3
44.6
43.6
Minor BPS
58.8
0.14
1.5
62.21
39.5

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019623
316657 - 402033
85377
ENSAPLT00000040319
316657 - 393403
76747
ENSAPLT00000002277
316657 - 387455
70799
ENSAPLT00000037468
316657 - 402033
85377
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000047235
316657 - 402033
85377
ENSAPLT00000024110
316657 - 393403
76747
ENSAPLT00000042003
316657 - 391709
75053