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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_363752_364595_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
363752 - 364595
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAGAA
5'SS Class:
major
3'SS Sequence:
GGTTGTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AGCATCTCAACT
Flanking Amino Acid:
QQQQMMQAQQFPVMQQGAPA
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
69.8
29.2
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
74.3
0.55
1
65.1
45.5
Minor 5ss
23.6
-3
3.1
28.7
43.6
Minor BPS
54.8
0.23
1.6
68.04
42.4

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019623
316657 - 402033
85377
ENSAPLT00000040319
316657 - 393403
76747
ENSAPLT00000002277
316657 - 387455
70799
ENSAPLT00000037468
316657 - 402033
85377
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000047235
316657 - 402033
85377
ENSAPLT00000024110
316657 - 393403
76747
ENSAPLT00000042003
316657 - 391709
75053