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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3646611_3653334_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3646611 - 3653334
Intron Length:
6724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAT
U12 Branch Point Sequence:
TATTGGCTAATT
Flanking Amino Acid:
VSEESMDETTGLKIREVYIN
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
61.6
0.29
1.3
63.6
42.5
Major PPT
84.6
0.78
0.7
81.7
23.3
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
45.9
-0.2
2.6
73.63
43.4

Associated Gene:

Gene:
UNC5D
Ensembl Gene ID:
ENSAPLG00000013846
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036432
3581943 - 3712002
130060
ENSAPLT00000023983
3581943 - 3712002
130060
ENSAPLT00000014468
3568680 - 3710079
141400