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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_364809_366780_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
364809 - 366780
Intron Length:
1972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
AAGATCATAACC
Flanking Amino Acid:
AQPAPQQEQVMQAQIRQQQK
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.7
34.5
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
75.8
0.58
0.8
69
37
Minor 5ss
31.8
-2.1
3.3
40.1
39.9
Minor BPS
51.3
0.02
1.6
59.66
38.8

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002277
316657 - 387455
70799
ENSAPLT00000037468
316657 - 402033
85377
ENSAPLT00000047235
316657 - 402033
85377
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000024110
316657 - 393403
76747
ENSAPLT00000042003
316657 - 391709
75053
ENSAPLT00000019623
316657 - 402033
85377
ENSAPLT00000040319
316657 - 393403
76747