About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3681201_3683985_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3681201 - 3683985
Intron Length:
2785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCAAC
U12 Branch Point Sequence:
CTCTCTTTCTCT
Flanking Amino Acid:
ENCTEGLCIQDKKPLHEIKS
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.3
32.8
Major BPS
43.7
-0.3
1.4
48.2
43.5
Major PPT
82.7
0.73
0.7
81.3
23.7
Minor 5ss
33.5
-1.9
3.1
44.4
43.7
Minor BPS
42.2
-0.5
3.6
70.73
46.8

Associated Gene:

Gene:
UNC5D
Ensembl Gene ID:
ENSAPLG00000013846
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036432
3581943 - 3712002
130060