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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_368288_369832_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
368288 - 369832
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCATGGCTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTCTTCATG
Flanking Amino Acid:
GGPSTFTAGTAEKTKDILNL
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
64
0.32
1.1
55.2
44.4
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
58.5
0.12
1.8
68.07
40.1

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002277
316657 - 387455
70799
ENSAPLT00000042003
316657 - 391709
75053
ENSAPLT00000040319
316657 - 393403
76747
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000024110
316657 - 393403
76747
ENSAPLT00000047235
316657 - 402033
85377