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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_368288_389997_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
368288 - 389997
Intron Length:
21710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCACACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTCTCCTTCACA
Flanking Amino Acid:
GGPSTFTAGTEDTNLIAGFD
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
74
0.6
1
65.6
41.1
Major PPT
74.1
0.54
0.9
66.8
33.7
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
74.9
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037468
316657 - 402033
85377