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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_368288_399563_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
368288 - 399563
Intron Length:
31276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTGAGTAACA
Flanking Amino Acid:
GGPSTFTAGTGLQRDPALFP
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80.4
0.69
0.8
78.2
35.2
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
46.9
-0.2
2.5
69.26
42.8

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019623
316657 - 402033
85377