Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3692240_3695909_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3692240 - 3695909

Intron Length:

3670

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TGCTCTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAA

U12 Branch Point Sequence:

CTTTCCAAAAGA

Flanking Amino Acid:

LGGRLVVPNTGVSLLIPHGA

Intron Amino Acid Position:

494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.1

38.4

Major BPS

68.1

0.45

1.3

78.7

34.9

Major PPT

78.3

0.64

0.9

72.4

37.7

Minor 5ss

28.3

-2.5

2.8

33.2

41.9

Minor BPS

48.7

-0.1

2.2

67.8

44.7

Associated Gene:

Gene:

UNC5D

Ensembl Gene ID:

ENSAPLG00000013846

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036432

3581943 - 3712002

130060

ENSAPLT00000023983

3581943 - 3712002

130060

ENSAPLT00000014468

3568680 - 3710079

141400