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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3695995_3700799_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3695995 - 3700799
Intron Length:
4805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCACACGCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTCCTCCACA
Flanking Amino Acid:
IYLAINQRESSLQPEGTDVL
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
59.4
0.21
1
51
37.7
Minor 5ss
41.3
-1
2.9
58.1
46.1
Minor BPS
67.6
0.55
2
83.78
36.8

Associated Gene:

Gene:
UNC5D
Ensembl Gene ID:
ENSAPLG00000013846
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036432
3581943 - 3712002
130060
ENSAPLT00000023983
3581943 - 3712002
130060
ENSAPLT00000014468
3568680 - 3710079
141400