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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_369929_383795_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
369929 - 383795
Intron Length:
13867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTAACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCTGCTTAACC
Flanking Amino Acid:
FIPLPLSDTPEKLIEGLKSP
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
66.5
0.37
1
58.7
41
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
67.9
0.54
1.8
73.91
43.5

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002277
316657 - 387455
70799
ENSAPLT00000042003
316657 - 391709
75053
ENSAPLT00000040319
316657 - 393403
76747
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000024110
316657 - 393403
76747