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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_369929_399563_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
369929 - 399563
Intron Length:
29635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTGAGTAACA
Flanking Amino Acid:
FIPLPLSDTPGLQRDPALFP
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80.4
0.69
0.8
78.2
35.2
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
46.9
-0.2
2.5
69.26
42.8

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047235
316657 - 402033
85377