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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3706731_3708591_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3706731 - 3708591
Intron Length:
1861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
GTATTCTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTTTTTGTATT
Flanking Amino Acid:
ILQIQTSILESERESITFFA
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
70.6
0.46
1
66.2
40.5
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
50.4
0.09
1.7
72.62
39

Associated Gene:

Gene:
UNC5D
Ensembl Gene ID:
ENSAPLG00000013846
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036432
3581943 - 3712002
130060
ENSAPLT00000023983
3581943 - 3712002
130060
ENSAPLT00000014468
3568680 - 3710079
141400