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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3708771_3709874_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3708771 - 3709874
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
CACCCCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTGCTTCATC
Flanking Amino Acid:
QMLAQKNSISRNLSYFATQR
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
73.6
0.53
0.8
69.1
31
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
60.2
0.3
2.2
77.77
38.8

Associated Gene:

Gene:
UNC5D
Ensembl Gene ID:
ENSAPLG00000013846
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014468
3568680 - 3710079
141400
ENSAPLT00000036432
3581943 - 3712002
130060
ENSAPLT00000023983
3581943 - 3712002
130060