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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_383898_385537_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
383898 - 385537
Intron Length:
1640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAATA
5'SS Class:
major
3'SS Sequence:
CACATTTGGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
TTTTGCACATTT
Flanking Amino Acid:
PFGSTSDAVNGKPDVAVESL
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
73.5
37.2
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
49.5
-0
1.2
50.8
41.6
Minor 5ss
42.7
-0.8
3
54.9
43.5
Minor BPS
44.8
-0.3
2.3
73.09
44

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042003
316657 - 391709
75053
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000024110
316657 - 393403
76747
ENSAPLT00000002277
316657 - 387455
70799