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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_383898_386421_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
383898 - 386421
Intron Length:
2524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAATA
5'SS Class:
major
3'SS Sequence:
AACCTGGATTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAACCTGGATT
Flanking Amino Acid:
PFGSTSDAVNDSLTGEDSLL
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
73.5
37.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
59.5
0.21
1.1
54.6
44.2
Minor 5ss
42.7
-0.8
3
54.9
43.5
Minor BPS
61.5
0.44
1.5
77.64
38.6

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040319
316657 - 393403
76747