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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3841603_3843519_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3841603 - 3843519
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GTTTTCCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTTTTTTCCACT
Flanking Amino Acid:
SLIIYFVNLAEEEGYQISFP
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
72.8
0.51
0.9
72.2
33.9
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
51.3
0.12
2
74.97
42.5

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936