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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3845247_3845701_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3845247 - 3845701
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTTTTCACTT
Flanking Amino Acid:
ILQFLRVTKNNYSIKLSKLF
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.1
24.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86
0.81
0.8
78.1
35.4
Minor 5ss
35.8
-1.6
2.8
40.3
40.1
Minor BPS
56.7
0.29
1.8
79.05
38

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936