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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3849211_3850268_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3849211 - 3850268
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGGGATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TCGGATTTAACT
Flanking Amino Acid:
LKSGDLKRVGMESANACLIL
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
78.1
36.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
64.2
0.32
1.1
56.5
42.7
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
59.2
0.37
1.7
72.11
45.1

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936