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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3850352_3851213_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3850352 - 3851213
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTATCTTTCATA
Flanking Amino Acid:
PYTEDTCNIMRVLSIKNHYP
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.9
0.65
0.9
73.4
35.6
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
59.1
0.28
1.7
68.59
38.2

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936