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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3854323_3856269_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3854323 - 3856269
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GTTTTCCCAATA
Flanking Amino Acid:
VELKFGSRGESTILINPSSG
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
81.6
30.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
76.4
0.59
0.9
70.4
33.9
Minor 5ss
37.3
-1.4
3.3
52.6
44.6
Minor BPS
52.6
0.08
1.9
68.94
37.3

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936