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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3856594_3860348_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3856594 - 3860348
Intron Length:
3755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGTTTCATT
Flanking Amino Acid:
KRRVHSRHFSEVLKLRSGSL
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.6
0.73
0.9
80.2
37.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
57.4
0.31
2.2
82.98
39.3

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936