About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3860446_3872055_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3860446 - 3872055
Intron Length:
11610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGCTAA
U12 Branch Point Sequence:
TGTTCTGTAGCT
Flanking Amino Acid:
INLPLQRFVDGVLDVQGKEN
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
46.7
-0.2
1.3
42.5
40.1
Major PPT
84.9
0.78
0.8
80.1
31.9
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
55
0.24
2.2
80.47
41.6

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936