Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_386533_387352_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

386533 - 387352

Intron Length:

820

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCAGAT

U12 Branch Point Sequence:

TATCAGATGACT

Flanking Amino Acid:

PVAFTAQPHKAAEHPAKIWA

Intron Amino Acid Position:

873

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

75.1

41.1

Major BPS

65.3

0.38

60.7

37.6

Major PPT

90.7

0.92

0.6

84.9

29.9

Minor 5ss

40.5

-1.1

3.1

57.9

46.4

Minor BPS

43.5

-0.4

2.4

68.09

42.1

Associated Gene:

Gene:

AAK1

Ensembl Gene ID:

ENSAPLG00000002094

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002277

316657 - 387455

70799