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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_38719_38803_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38719 - 38803
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTGCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
GAAGACCCAACT
Flanking Amino Acid:
IITNWDDMEKIWHHSFYNEL
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
66.6
0.37
0.9
61.2
35.1
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
42.4
-0.5
2
57.64
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006060
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021805
38332 - 40637
2306