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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3874696_3875152_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3874696 - 3875152
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTCTCCTTATCA
Flanking Amino Acid:
QNFPKLWLFSGSALCCADLR
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.9
32.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
78.3
0.64
1
78
40.1
Minor 5ss
39.9
-1.1
3.2
59.5
44.6
Minor BPS
76.1
0.82
1.5
83.19
37.9

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936