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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3875331_3880533_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3875331 - 3880533
Intron Length:
5203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATTGACT
Flanking Amino Acid:
MQDKPSSASLDAVFRGRALG
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.4
0.66
0.9
72.7
37
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
67
0.62
1.6
83.78
37.2

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936