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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3880612_3884345_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3880612 - 3884345
Intron Length:
3734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
GCTTATCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTTTGCTTATCC
Flanking Amino Acid:
YKRIPITTELKSSPNAQFIN
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
77.7
33.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
68.7
0.42
1
62.6
38.3
Minor 5ss
43.1
-0.8
2.9
54.7
43.6
Minor BPS
59.7
0.28
2.1
73.85
43.3

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936