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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3888083_3888326_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3888083 - 3888326
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
GCTTCTTTTACA
Flanking Amino Acid:
LSERLLTGVTQEDSFGDVYC
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.2
37.4
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
85.4
0.8
0.8
79.4
32.6
Minor 5ss
37
-1.5
3
50
46.3
Minor BPS
65.7
0.49
1.6
71.79
40.2

Associated Gene:

Gene:
KCNU1
Ensembl Gene ID:
ENSAPLG00000014841
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015471
3840746 - 3889681
48936