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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_38915_39220_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38915 - 39220
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CCCCAGCTAACT
Flanking Amino Acid:
PKANREKMTQIMFETFNVPA
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
82
0.72
0.7
76.1
26
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
39.9
-0.6
2.3
54.64
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006060
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021805
38332 - 40637
2306