About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3917839_3931438_F

Intron Information:

Intron Rank:
143165
Intron Class:
major
Intron Phase:
Intron Coordinates:
3917839 - 3931438
Intron Length:
13600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGAAAT
U12 Branch Point Sequence:
AGGGAGAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.5
29.7
Major BPS
46.7
-0.2
1.3
51
41.5
Major PPT
82
0.72
0.8
76.3
32.3
Minor 5ss
38.8
-1.3
2.9
49.9
46.4
Minor BPS
31.5
-1.3
2.1
43.53
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027126
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022981
3917739 - 3933157
15419