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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_39306_39388_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39306 - 39388
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCCAT
U12 Branch Point Sequence:
TGCTGTTGAGCC
Flanking Amino Acid:
LSLYASGRTTGIVLDSGDGV
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
57.2
0.18
1.3
68.1
38
Major PPT
76.4
0.59
0.8
68.1
32
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
44.7
-0.4
2
55.58
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006060
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021805
38332 - 40637
2306