About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3957841_3997001_F

Intron Information:

Intron Rank:
128914
Intron Class:
major
Intron Phase:
Intron Coordinates:
3957841 - 3997001
Intron Length:
39161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCCCCTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.2
0.79
0.8
82.8
27.4
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
54.2
0.21
2.1
72.56
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019358
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029746
3957704 - 3997965
40262