About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_39825_40041_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39825 - 40041
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
CCTTCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
TGACAGCCACCT
Flanking Amino Acid:
PETLFQPSFIGMESAGIHET
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.3
41.7
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
84.5
0.78
0.7
76.5
32.1
Minor 5ss
38.3
-1.3
3
45.9
43.3
Minor BPS
31.7
-1.3
2.3
49.61
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006060
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021805
38332 - 40637
2306