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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_407234_408360_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
407234 - 408360
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTAACAAAACT
Flanking Amino Acid:
ARLRGWAAAGRFCRTILKDH
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.2
87.9
29.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.2
0.64
0.9
70.5
40.9
Minor 5ss
41.5
-0.9
2.9
58.8
45.7
Minor BPS
49.7
0.06
2.1
79.09
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001741
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041079
406496 - 422137
15642