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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_408468_412750_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
408468 - 412750
Intron Length:
4283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
FPPSAVLHNTVRCMFIQTQD
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.8
78
40.1
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001741
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041079
406496 - 422137
15642
ENSAPLT00000031568
406639 - 422137
15499
ENSAPLT00000001963
407398 - 422137
14740