Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4085351_4085457_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4085351 - 4085457

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGGCGG

5'SS Class:

major

3'SS Sequence:

CTTCTCTCCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

TGTCCCTTCTCT

Flanking Amino Acid:

IEEGHIGVYYRGGALLTSTS

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

51.7

46.6

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

82.5

0.73

0.7

80.7

24.5

Minor 5ss

25.2

-2.9

3.1

30.3

42.8

Minor BPS

44.5

-0.3

3.6

78.39

43.5

Associated Gene:

Gene:

ERLIN2

Ensembl Gene ID:

ENSAPLG00000014963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040163

4084498 - 4095682

11185

ENSAPLT00000015652

4085040 - 4095682

10643