About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4093776_4095616_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4093776 - 4095616
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
TTTTCCCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCAGCTTTATTT
Flanking Amino Acid:
GIHEEDGAGARK*
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1
62.5
37.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.5
0.71
0.9
81.6
30.4
Minor 5ss
29.3
-2.4
3.1
37.6
40.8
Minor BPS
53.6
0.19
1.7
67.81
44

Associated Gene:

Gene:
ERLIN2
Ensembl Gene ID:
ENSAPLG00000014963
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015652
4085040 - 4095682
10643