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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4098252_4098578_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4098252 - 4098578
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
TCCCCCTCACCT
Flanking Amino Acid:
VQQAAARRPQGLPDVQPRLV
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
74.6
0.55
0.8
65.8
36
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
51.1
0.11
1.9
69.41
47.1

Associated Gene:

Gene:
PLPBP
Ensembl Gene ID:
ENSAPLG00000015393
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016052
4098156 - 4099679
1524