Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4098687_4099142_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4098687 - 4099142

Intron Length:

456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTGAGTGTG

5'SS Class:

major

3'SS Sequence:

TCTCTGCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

TCAAACCTAACT

Flanking Amino Acid:

HGQRSFGENYILSSCPEIKW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.3

72.2

39.5

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

81.8

0.71

0.8

72.8

37.5

Minor 5ss

32.2

-2

3.3

39.4

39.8

Minor BPS

51.6

0.13

1.9

71.85

44.1

Associated Gene:

Gene:

PLPBP

Ensembl Gene ID:

ENSAPLG00000015393

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016052

4098156 - 4099679

1524