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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4118815_4119278_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4118815 - 4119278
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
TTCGCACATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGCAC
U12 Branch Point Sequence:
TCGCCCTGCAGT
Flanking Amino Acid:
ERVTNNRGDFRWPRTLAGIT
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67
35.3
Major BPS
60.1
0.25
1.4
71.3
36.7
Major PPT
68.9
0.43
1
59.3
41.1
Minor 5ss
26.7
-2.7
3.2
34.1
41.8
Minor BPS
44.7
-0.3
2.2
61.86
47.7

Associated Gene:

Gene:
ADGRA2
Ensembl Gene ID:
ENSAPLG00000008397
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008730
4117884 - 4123420
5537