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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4119481_4119562_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4119481 - 4119562
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
TCCCCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
CAGCCGGTGACC
Flanking Amino Acid:
ITRVLYTFVLMPINASNALT
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
52.3
46.1
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
75.9
0.58
0.7
69.2
24.6
Minor 5ss
32
-2.1
3
35.4
42.3
Minor BPS
39.7
-0.8
2.5
47.51
42.5

Associated Gene:

Gene:
ADGRA2
Ensembl Gene ID:
ENSAPLG00000008397
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008730
4117884 - 4123420
5537