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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4120015_4120128_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4120015 - 4120128
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
CTATGCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
CTATGCCCAGCA
Flanking Amino Acid:
LSSNSQHMAVNSRNIAFEAY
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.56
1
55
43.8
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
65.6
0.35
1
59.8
36.5
Minor 5ss
32.9
-2
3
36.9
41.3
Minor BPS
39.9
-0.7
2.3
53.31
44.6

Associated Gene:

Gene:
ADGRA2
Ensembl Gene ID:
ENSAPLG00000008397
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008730
4117884 - 4123420
5537