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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4120624_4120859_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4120624 - 4120859
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
CGTTCCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCCTGCTCACTC
Flanking Amino Acid:
VATPVIYAGTYGCGVGNLTE
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.2
64.4
38.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70.3
0.46
1
65.6
36
Minor 5ss
33.8
-1.8
3.7
48.7
47
Minor BPS
44
-0.4
2.1
53.52
45

Associated Gene:

Gene:
ADGRA2
Ensembl Gene ID:
ENSAPLG00000008397
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008730
4117884 - 4123420
5537