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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4121501_4121592_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4121501 - 4121592
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGCGCC
5'SS Class:
major
3'SS Sequence:
CCTCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGACCGTAGCG
Flanking Amino Acid:
LTGYLLVCQAVGIILHYSSL
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
57.3
43.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
68.7
0.42
0.8
61.3
29.1
Minor 5ss
37
-1.5
3.5
51.3
45.5
Minor BPS
44.5
-0.5
2.3
51.68
48.4

Associated Gene:

Gene:
ADGRA2
Ensembl Gene ID:
ENSAPLG00000008397
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008730
4117884 - 4123420
5537